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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malKABC transporter, ATP-binding protein; KEGG: pfo:Pfl_4466 6.8e-23 ABC transporter-like K02052; COG: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (191 aa)    
Predicted Functional Partners:
SsuC_2
ABC transporter, permease protein; KEGG: lwe:lwe0999 0.0030 gbuB; glycine betaine/L-proline ABC transporter, permease protein; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.997
EDS05429.1
Hypothetical protein; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; Psort location: CytoplasmicMembrane, score: 9.87.
 
  
 0.973
ThiF
ThiF family protein; KEGG: eca:ECA0230 1.2e-34 thiF; thiamine biosynthesis adenylyltransferase K03148; COG: COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; Psort location: Cytoplasmic, score: 8.87.
  
    0.779
Mog_1
Molybdenum cofactor synthesis domain protein; KEGG: hpa:HPAG1_0784 4.0e-25 molybdopterin biosynthesis protein; COG: COG0521 Molybdopterin biosynthesis enzymes; Psort location: Cytoplasmic, score: 8.87.
       0.775
ecfA1_3
ABC transporter, ATP-binding protein; KEGG: nma:NMA0842 2.0e-32 fbpC; iron transport system ATP-binding protein K02010; COG: COG1122 ABC-type cobalt transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
     0.598
EDS05426.1
Hypothetical protein.
 
     0.563
ssuC_3
KEGG: rha:RHA1_ro08170 1.2e-18 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.535
ssuC_1
KEGG: rha:RHA1_ro08170 4.0e-18 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.535
cmpB
KEGG: rha:RHA1_ro08170 1.2e-14 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.535
EDS05427.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.522
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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