STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05442.1Hypothetical protein. (55 aa)    
Predicted Functional Partners:
tupA
Tungstate ABC transporter, tungstate-binding protein; COG: COG2998 ABC-type tungstate transport system, permease component.
       0.557
tupB
Putative ATP synthase F0, A subunit; KEGG: pac:PPA0505 1.2e-12 ABC transporter, putative molybdenum transport system K02017:K02018; COG: COG4662 ABC-type tungstate transport system, periplasmic component; Psort location: CytoplasmicMembrane, score: 10.00.
       0.524
tupC
KEGG: bbr:BB1043 1.2e-23 ATP-binding component of ABC transporter K02010; COG: COG3839 ABC-type sugar transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49.
       0.524
moeA_1
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.524
moeA_2
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.514
hpaIIM
Modification methylase HpaII; KEGG: mpe:MYPE9800 3.9e-75 cytosine-specific DNA methylase K00558; COG: COG0270 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
       0.484
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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