Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
mprA_2Transcriptional regulator, MarR family; COG: NOG36306 non supervised orthologous group. (169 aa)    
Predicted Functional Partners:
EDS05456.1
Hypothetical protein; COG: COG0716 Flavodoxins; Psort location: Cytoplasmic, score: 8.87.
 
     0.802
EDS05309.1
Hypothetical protein; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.671
EDS05453.1
Hypothetical protein; COG: NOG30793 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.646
EDS05454.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.645
EDS07212.1
Hypothetical protein; COG: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 
  
 0.588
EDS05457.1
DNA-binding helix-turn-helix protein; COG: NOG36646 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
   0.542
EDS05458.1
Hypothetical protein.
       0.531
yxlF_4
ABC transporter, ATP-binding protein; KEGG: ava:Ava_3286 1.0e-35 ABC transporter-like K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.531
EDS05460.1
Hypothetical protein; COG: NOG13457 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.531
EDS06123.1
Hypothetical protein; COG: NOG19109 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.446
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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