STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05456.1Hypothetical protein; COG: COG0716 Flavodoxins; Psort location: Cytoplasmic, score: 8.87. (139 aa)    
Predicted Functional Partners:
mprA_2
Transcriptional regulator, MarR family; COG: NOG36306 non supervised orthologous group.
 
    0.802
EDS05453.1
Hypothetical protein; COG: NOG30793 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.734
EDS05454.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.724
Rbr
Rubrerythrin; KEGG: cpr:CPR_0938 2.1e-51 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.579
EDS06542.1
Hemerythrin HHE cation binding domain protein; KEGG: mmu:66576 0.0062 Uqcrh; ubiquinol-cytochrome c reductase hinge protein K00416; COG: COG2703 Hemerythrin; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.541
EDS05457.1
DNA-binding helix-turn-helix protein; COG: NOG36646 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.531
EDS05458.1
Hypothetical protein.
       0.531
yxlF_4
ABC transporter, ATP-binding protein; KEGG: ava:Ava_3286 1.0e-35 ABC transporter-like K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.531
EDS05460.1
Hypothetical protein; COG: NOG13457 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.531
EDS06718.1
Rubredoxin; KEGG: cpr:CPR_0938 1.8e-219 periplasmic [Fe] hydrogenase 1 K00532; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.472
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.