STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05457.1DNA-binding helix-turn-helix protein; COG: NOG36646 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (374 aa)    
Predicted Functional Partners:
EDS05458.1
Hypothetical protein.
 
     0.940
EDS05460.1
Hypothetical protein; COG: NOG13457 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.940
yxlF_4
ABC transporter, ATP-binding protein; KEGG: ava:Ava_3286 1.0e-35 ABC transporter-like K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.918
EDS04849.1
DNA-binding helix-turn-helix protein; COG: NOG26022 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.570
fliU
Hypothetical protein; KEGG: sec:SC1961 1.6e-10 fliB; N-methylation of lysine residues in flagellin K00599; COG: NOG18602 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.568
apeB
Aminopeptidase I zinc metalloprotease (M18); KEGG: tde:TDE0829 2.0e-101 aspartyl aminopeptidase, putative K01269; COG: COG1362 Aspartyl aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
       0.568
EDS05463.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.568
mprA_2
Transcriptional regulator, MarR family; COG: NOG36306 non supervised orthologous group.
  
 
 0.558
EDS05024.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.550
EDS05456.1
Hypothetical protein; COG: COG0716 Flavodoxins; Psort location: Cytoplasmic, score: 8.87.
       0.531
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.