STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliUHypothetical protein; KEGG: sec:SC1961 1.6e-10 fliB; N-methylation of lysine residues in flagellin K00599; COG: NOG18602 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (401 aa)    
Predicted Functional Partners:
apeB
Aminopeptidase I zinc metalloprotease (M18); KEGG: tde:TDE0829 2.0e-101 aspartyl aminopeptidase, putative K01269; COG: COG1362 Aspartyl aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
       0.779
EDS05463.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS05611.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.594
EDS05457.1
DNA-binding helix-turn-helix protein; COG: NOG36646 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.568
EDS05458.1
Hypothetical protein.
       0.568
yxlF_4
ABC transporter, ATP-binding protein; KEGG: ava:Ava_3286 1.0e-35 ABC transporter-like K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.568
EDS05460.1
Hypothetical protein; COG: NOG13457 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.568
EDS05418.1
Hypothetical protein; COG: COG0727 Predicted Fe-S-cluster oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
  
     0.562
EDS06909.1
LysM domain protein; KEGG: lsl:LSL_0304 0.0019 phage lysin K01185; COG: NOG23722 non supervised orthologous group.
 
     0.560
EDS05466.1
Hypothetical protein; KEGG: hpa:HPAG1_0922 3.9e-11 amino acid ABC transporter, permease protein; COG: COG0765 ABC-type amino acid transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.82.
  
    0.475
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.