Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybbH_2KEGG: bte:BTH_I1550 1.0e-15 glucokinase/transcriptional regulator, RpiR family, fusion K00845; COG: COG1737 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (277 aa)    
Predicted Functional Partners:
gatY
Ketose-bisphosphate aldolase; KEGG: chy:CHY_0128 3.9e-43 fba; fructose-1,6-bisphosphate aldolase, class II K01624; COG: COG0191 Fructose/tagatose bisphosphate aldolase; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS05480.1
Hypothetical protein.
       0.773
EDS05478.1
Hypothetical protein; KEGG: mmp:MMP1296 5.8e-05 pfkC; ADP-dependent phosphofructokinase K00918; COG: COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase; Psort location: Cytoplasmic, score: 8.87.
 
     0.768
hexR_2
SIS domain protein; KEGG: bam:Bamb_0825 2.5e-06 glucokinase K00845; COG: COG1737 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.754
msmE_2
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 1.3e-10 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.658
ycjO_2
KEGG: ava:Ava_0243 7.8e-05 molybdate ABC transporter, permease protein K02018; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.600
ycjP_3
KEGG: cya:CYA_1846 1.8e-05 modB; molybdate ABC transporter, permease protein K02018; COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.594
EDS05482.1
Hypothetical protein; COG: NOG17819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.470
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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