Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
polA_1KEGG: sak:SAK_0725 5.0e-217 prophage LambdaSa04, DNA polymerase K00961; COG: COG0749 DNA polymerase I - 3-5 exonuclease and polymerase domains; Psort location: Cytoplasmic, score: 8.87. (662 aa)    
Predicted Functional Partners:
EDS05370.1
Prophage LambdaSa04, DNA primase, P4 family; COG: COG3378 Predicted ATPase.
 
     0.942
EDS05375.1
Hypothetical protein; COG: NOG11396 non supervised orthologous group.
 
     0.906
EDS05376.1
Hypothetical protein; COG: NOG07892 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.906
EDS05372.1
Hypothetical protein; COG: NOG14267 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.903
EDS05377.1
Hypothetical protein; COG: NOG23194 non supervised orthologous group.
 
   
 0.894
EDS08675.1
KEGG: lwe:lwe1660 7.9e-21 DNA/RNA helicase protein K01529; COG: COG0553 Superfamily II DNA/RNA helicases, SNF2 family; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.796
EDS08676.1
VRR-NUC domain protein; COG: NOG18350 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.791
EDS08680.1
Hypothetical protein; COG: NOG11396 non supervised orthologous group.
 
     0.785
EDS08681.1
Hypothetical protein; COG: NOG07892 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.785
EDS08682.1
Hypothetical protein; COG: NOG23194 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.777
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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