Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
pepIP_1Proline-specific peptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family. (296 aa)    
Predicted Functional Partners:
EDS06623.1
KEGG: bce:BC2835 1.2e-66 proline racemase K01777; COG: COG3938 Proline racemase; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.914
pepIP_2
Hypothetical protein; KEGG: ldb:Ldb1896 5.6e-19 pepIP; proline iminopeptidase K01259; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
 
0.911
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
  0.901
proC-2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
  0.901
dtpT
Amino acid/peptide transporter; COG: COG3104 Dipeptide/tripeptide permease; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.770
EDS07538.1
Hypothetical protein; COG: COG3104 Dipeptide/tripeptide permease; Psort location: CytoplasmicMembrane, score: 9.75.
 
   
 0.584
EDS04943.1
Peptidase, M24 family; KEGG: cpe:CPE2497 1.7e-95 probable proline dipeptidase K01271; COG: COG0006 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.532
EDS04942.1
Creatinase; KEGG: fnu:FN0453 5.6e-138 Xaa-Pro aminopeptidase K01262; COG: COG0006 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.406
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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