Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dtpTAmino acid/peptide transporter; COG: COG3104 Dipeptide/tripeptide permease; Psort location: CytoplasmicMembrane, score: 10.00. (453 aa)    
Predicted Functional Partners:
pepIP_1
Proline-specific peptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
 
   
 0.770
EDS06620.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.725
prdA
D-proline reductase, PrdA proprotein; Psort location: Cytoplasmic, score: 8.87.
  
     0.682
prdA-2
D-proline reductase, PrdA proprotein; KEGG: sth:STH2870 1.9e-12 grdE; glycine reductase proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.678
prdA_3
Hypothetical protein; KEGG: tte:TTE1879 1.9e-05 GrdE proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.657
prdA_2
Hypothetical protein; KEGG: chy:CHY_2391 2.1e-06 grdE; glycine reductase proprotein GrdE.
  
     0.630
EDS04943.1
Peptidase, M24 family; KEGG: cpe:CPE2497 1.7e-95 probable proline dipeptidase K01271; COG: COG0006 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.615
prdA_5
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.611
EDS04942.1
Creatinase; KEGG: fnu:FN0453 5.6e-138 Xaa-Pro aminopeptidase K01262; COG: COG0006 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
     
 0.589
prdA_6
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.587
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.