Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS04943.1Peptidase, M24 family; KEGG: cpe:CPE2497 1.7e-95 probable proline dipeptidase K01271; COG: COG0006 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.87. (366 aa)    
Predicted Functional Partners:
dtpT
Amino acid/peptide transporter; COG: COG3104 Dipeptide/tripeptide permease; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.615
EDS04942.1
Creatinase; KEGG: fnu:FN0453 5.6e-138 Xaa-Pro aminopeptidase K01262; COG: COG0006 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
     
 0.534
pepIP_1
Proline-specific peptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
 
 
 
 0.532
EDS07538.1
Hypothetical protein; COG: COG3104 Dipeptide/tripeptide permease; Psort location: CytoplasmicMembrane, score: 9.75.
 
   
 0.527
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.499
EDS06620.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.474
prdA
D-proline reductase, PrdA proprotein; Psort location: Cytoplasmic, score: 8.87.
  
     0.458
prdA_3
Hypothetical protein; KEGG: tte:TTE1879 1.9e-05 GrdE proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.437
prdA-2
D-proline reductase, PrdA proprotein; KEGG: sth:STH2870 1.9e-12 grdE; glycine reductase proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.426
EDS06614.1
Hypothetical protein; COG: NOG11520 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.417
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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