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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04959.1YihY family protein; KEGG: btl:BALH_0409 1.6e-37 rbn; ribonuclease BN; COG: COG1295 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the UPF0761 family. (281 aa)    
Predicted Functional Partners:
LytB_1
SpoIID/LytB domain protein; COG: COG2385 Sporulation protein and related proteins; Psort location: Cytoplasmic, score: 8.87.
       0.566
sppA
KEGG: bli:BL00425 1.7e-51 sppA; signal peptide peptidase K04773; COG: COG0616 Periplasmic serine proteases (ClpP class).
 
    0.484
dagK
Lipid kinase, YegS/Rv2252/BmrU family; KEGG: eci:UTI89_C2362 4.3e-21 hypothetical protein; COG: COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; Psort location: Cytoplasmic, score: 8.87.
 
    0.477
EDS04963.1
RDD family protein; COG: COG1714 Predicted membrane protein/domain; Psort location: Cytoplasmic, score: 8.87.
       0.441
nnr
YjeF domain protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]
 
     0.413
pheS
KEGG: cpr:CPR_1852 5.2e-119 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889; COG: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Psort location: Cytoplasmic, score: 10.00.
       0.410
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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