close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sppAKEGG: bli:BL00425 1.7e-51 sppA; signal peptide peptidase K04773; COG: COG0616 Periplasmic serine proteases (ClpP class). (325 aa)    
Predicted Functional Partners:
EDS04963.1
RDD family protein; COG: COG1714 Predicted membrane protein/domain; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.968
pheT
KEGG: cno:NT01CX_1768 1.5e-199 pheT; phenylalanyl-tRNA synthetase, beta subunit K01888; COG: COG0073 EMAP domain; Psort location: Cytoplasmic, score: 9.98.
       0.762
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.726
pheS
KEGG: cpr:CPR_1852 5.2e-119 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889; COG: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Psort location: Cytoplasmic, score: 10.00.
       0.684
EDS08576.1
Hypothetical protein; KEGG: cpf:CPF_1123 1.3e-16 cell wall-associated serine proteinase K01361; COG: NOG17334 non supervised orthologous group.
  
  
 0.585
EDS08557.1
Hypothetical protein; COG: COG3402 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.499
EDS04959.1
YihY family protein; KEGG: btl:BALH_0409 1.6e-37 rbn; ribonuclease BN; COG: COG1295 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the UPF0761 family.
 
    0.484
EDS08556.1
COG: COG3428 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.454
EDS04965.1
Hypothetical protein.
       0.426
EDS06641.1
Hypothetical protein; COG: NOG29868 non supervised orthologous group.
  
     0.424
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.