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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04965.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
regX3_2
Response regulator receiver domain protein; KEGG: fal:FRAAL1628 2.2e-26 response regulator in two-component regulatory system; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.723
resE_2
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01918 8.0e-36 resE; sensor protein ResE; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
       0.723
bceA_1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 1.6e-46 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.537
EDS04969.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 0.00081 ATPase K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
       0.537
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.459
sppA
KEGG: bli:BL00425 1.7e-51 sppA; signal peptide peptidase K04773; COG: COG0616 Periplasmic serine proteases (ClpP class).
       0.426
EDS04963.1
RDD family protein; COG: COG1714 Predicted membrane protein/domain; Psort location: Cytoplasmic, score: 8.87.
       0.426
pheT
KEGG: cno:NT01CX_1768 1.5e-199 pheT; phenylalanyl-tRNA synthetase, beta subunit K01888; COG: COG0073 EMAP domain; Psort location: Cytoplasmic, score: 9.98.
       0.403
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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