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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hndAKEGG: tte:TTE0890 2.1e-42 nuoE; NADH:ubiquinone oxidoreductase 24 kD subunit K00334; COG: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; Psort location: Cytoplasmic, score: 9.98. (164 aa)    
Predicted Functional Partners:
hndC_1
4Fe-4S binding domain protein; KEGG: tte:TTE0893 3.3e-243 nuoF; NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335; COG: COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; Psort location: Cytoplasmic, score: 9.98.
 0.997
HndD_1
Hydrogenase, Fe-only; KEGG: tte:TTE0894 8.9e-195 nuoG; NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) K00336; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
 
 0.991
hndD_3
4Fe-4S binding domain protein; KEGG: chy:CHY_0733 7.8e-24 fdhA; NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing K00123; COG: COG3383 Uncharacterized anaerobic dehydrogenase; Psort location: CytoplasmicMembrane, score: 7.80.
 0.975
hndC_3
4Fe-4S binding domain protein; KEGG: swo:Swol_1701 3.0e-194 NADH dehydrogenase (quinone) K05903; COG: COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; Psort location: Cytoplasmic, score: 9.98.
 0.959
hndD_2
Hydrogenase, Fe-only; KEGG: mta:Moth_1717 6.0e-134 iron hydrogenase, small subunit K00336; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
 
 0.942
HndB
Hypothetical protein; KEGG: tma:TM0011 1.4e-20 NADP-reducing hydrogenase, subunit B K00329; COG: COG3411 Ferredoxin; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.938
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 0.892
petC1
FAD dependent oxidoreductase; KEGG: mma:MM1656 6.2e-84 oxidoreductase K00100; COG: COG0665 Glycine/D-amino acid oxidases (deaminating); Psort location: Cytoplasmic, score: 8.87.
   
 
 0.871
baiE
KEGG: msm:MSMEG_2245 1.9e-11 bile-acid 7-alpha dehydratase; COG: NOG20037 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
 0.829
ResE_1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: rba:RB3615 1.1e-09 atoS; sensor protein AtoS; COG: NOG34205 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
     
 0.819
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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