Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trkATrkA N-terminal domain protein; KEGG: wbm:Wbm0237 0.0021 nucleoside-diphosphate-sugar epimerase K00329:K00356; COG: COG0569 K+ transport systems, NAD-binding component; Psort location: Cytoplasmic, score: 8.87. (452 aa)    
Predicted Functional Partners:
trkH
KEGG: shn:Shewana3_0031 1.6e-67 potassium uptake protein, TrkH family K00961; COG: COG0168 Trk-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.971
EDS05033.1
Hypothetical protein; COG: NOG10992 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.63.
       0.726
EDS05034.1
Transporter, auxin efflux carrier (AEC) family protein; KEGG: azo:azo2534 1.1e-11 mdcF2; putative malonate transporter; COG: COG0679 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.97.
       0.723
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.584
FusA_1
KEGG: cpf:CPF_0074 6.6e-167 fusA; translation elongation factor G K02355; COG: COG0480 Translation elongation factors (GTPases); Psort location: Cytoplasmic, score: 9.98.
       0.519
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.495
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
    0.449
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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