Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mta_1Transcriptional regulator, MerR family; KEGG: syn:sll0794 0.00013 corR, merR, cobH, cbiC; cobalt-dependent transcriptional regulator (MerR (mercuric resistance operon regulatory protein)-like domain in N-terminal half), precorrin isomerase, Precorrin-8X methylmutase (in C-terminal half) K01833; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (290 aa)    
Predicted Functional Partners:
EDS05182.1
Pentapeptide repeat protein; COG: COG1357 Uncharacterized low-complexity proteins.
  
     0.466
zntR_1
Transcriptional regulator, MerR family; KEGG: eci:UTI89_C3737 3.2e-07 yhdM; Zn(II)-responsive regulator of ZntA; COG: NOG23448 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.461
EDS05041.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.409
EDS05042.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
       0.409
EDS05043.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.409
leuS
leucine--tRNA ligase; KEGG: bsu:BG10676 5.8e-239 leuS; leucyl-tRNA synthetase K01869; COG: COG0495 Leucyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.407
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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