Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
abgB_1Amidohydrolase; KEGG: eco:b1337 1.5e-73 abgB; predicted peptidase, aminobenzoyl-glutamate utilization protein K01436; COG: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Psort location: Cytoplasmic, score: 8.87. (455 aa)    
Predicted Functional Partners:
EDS05068.1
Hypothetical protein; COG: NOG17934 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.859
EDS05069.1
Hypothetical protein; COG: NOG13768 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.852
pucR_1
Purine catabolism regulatory protein-like family; KEGG: shn:Shewana3_2682 9.8e-05 transcriptional regulator, CdaR K01694; COG: COG2508 Regulator of polyketide synthase expression; Psort location: Cytoplasmic, score: 8.87.
 
     0.632
raiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.411
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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