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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05071.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (203 aa)    
Predicted Functional Partners:
typA
KEGG: hac:Hac_1074 1.2e-183 typA; GTP-binding protein TypA/BipA homolog; COG: COG1217 Predicted membrane GTPase involved in stress response; Psort location: Cytoplasmic, score: 9.98.
       0.786
bcrC
PAP2 family protein; KEGG: bce:BC2260 2.2e-11 phosphatidylglycerophosphatase B K01094; COG: COG0671 Membrane-associated phospholipid phosphatase; Psort location: CytoplasmicMembrane, score: 9.97.
       0.776
EDS05074.1
COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
       0.545
raiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.533
EDS08291.1
Tetratricopeptide repeat protein; KEGG: mth:MTH977 0.00053 endo-1,4-beta-glucanase related protein K01179; COG: COG3291 FOG: PKD repeat; Psort location: Cytoplasmic, score: 8.87.
  
     0.513
EDS07980.1
Hypothetical protein; KEGG: ddi:DDB0167703 1.5e-05 hypothetical protein K01971; COG: KOG1181 FOG: Low-complexity; Psort location: Cytoplasmic, score: 8.87.
  
     0.470
EDS05069.1
Hypothetical protein; COG: NOG13768 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.444
EDS05068.1
Hypothetical protein; COG: NOG17934 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.432
EDS08620.1
Hypothetical protein.
  
     0.430
EDS06662.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.422
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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