Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05134.1Hypothetical protein; KEGG: cpf:CPF_2368 3.3e-69 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases; Psort location: Cytoplasmic, score: 8.87. (567 aa)    
Predicted Functional Partners:
EDS06828.1
Putative peptidoglycan binding domain protein; KEGG: tte:TTE2617 0.0013 prc3; periplasmic protease; COG: NOG36567 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.816
EDS06525.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.768
EDS05758.1
LysM domain protein; KEGG: oih:OB0220 0.0012 N-acetylmuramoyl-L-alanine amidase (autolysine) K01448; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.767
EDS06909.1
LysM domain protein; KEGG: lsl:LSL_0304 0.0019 phage lysin K01185; COG: NOG23722 non supervised orthologous group.
 
   
 0.764
spoIIP
Stage II sporulation protein P; COG: NOG13213 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.761
EDS08111.1
Hypothetical protein; KEGG: ccr:CC0365 0.0040 F-type H+-transporting ATPase b chain K02109; COG: NOG17862 non supervised orthologous group.
  
     0.741
EDS07652.1
Hypothetical protein; KEGG: ctc:CTC00811 3.5e-07 fumarate reductase flavoprotein subunit precursor K00244; COG: COG3976 Uncharacterized protein conserved in bacteria.
  
     0.738
cotS
Spore coat protein, CotS family; COG: NOG09979 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.737
lspA_1
Hypothetical protein; This protein specifically catalyzes the removal of signal peptides from prolipoproteins.
 
   
 0.726
EDS07659.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.718
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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