Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS05142.1GDSL-like protein; KEGG: rba:RB973 0.00010 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) K01137; COG: NOG21955 non supervised orthologous group. (265 aa)    
Predicted Functional Partners:
EDS05141.1
Hypothetical protein.
 
     0.954
EDS05139.1
Hypothetical protein.
 
     0.944
patA_2
MBOAT family protein; KEGG: pen:PSEEN4543 9.2e-90 algI; alginate O-acetylation protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the membrane-bound acyltransferase family.
 
     0.865
ligA
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
  
    0.759
rluF
KEGG: cpe:CPE2313 1.1e-61 pseudouridylate synthase K06182; COG: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
       0.736
clpX-2
KEGG: bcz:BCZK4216 6.6e-96 clpX; ATP-dependent Clp protease, ATP-binding subunit K03544; COG: COG1219 ATP-dependent protease Clp, ATPase subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.708
gerN
Transporter, CPA2 family; COG: COG0475 Kef-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.700
EDS05144.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.575
EDS07980.1
Hypothetical protein; KEGG: ddi:DDB0167703 1.5e-05 hypothetical protein K01971; COG: KOG1181 FOG: Low-complexity; Psort location: Cytoplasmic, score: 8.87.
  
     0.574
EDS08291.1
Tetratricopeptide repeat protein; KEGG: mth:MTH977 0.00053 endo-1,4-beta-glucanase related protein K01179; COG: COG3291 FOG: PKD repeat; Psort location: Cytoplasmic, score: 8.87.
 
    0.556
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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