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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05147.1ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 9.7e-47 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (234 aa)    
Predicted Functional Partners:
smc_2
Efflux ABC transporter, permease protein; KEGG: cal:orf19.6148 2.1e-08 USO2; intracellular protein transport K01553; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
    0.953
EDS07002.1
Hypothetical protein; KEGG: cch:Cag_0337 0.0018 ATPase K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.75.
  
 
 0.825
EDS07004.1
Hypothetical protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.825
EDS06965.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.75.
  
 
 0.825
EDS05115.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 
 0.825
macB_2
KEGG: pen:PSEEN3042 2.5e-41 macB; macrolide ABC efflux protein MacB; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
   0.763
EDS05148.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.539
mdtA
Efflux transporter, RND family, MFP subunit; KEGG: cal:orf19.7201 0.00079 SLA2; structural constituent of cytoskeleton K00870; COG: COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.475
htpG_1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: hpa:HPAG1_0211 2.6e-60 chaperone and heat shock protein 90; COG: COG0326 Molecular chaperone, HSP90 family; Psort location: Cytoplasmic, score: 9.98.
       0.455
bceB_2
Efflux ABC transporter, permease protein; KEGG: msm:MSMEG_1710 0.0077 ribose transport system permease protein RbsC; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
   0.454
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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