Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05153.1Hypothetical protein; COG: COG5441 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (416 aa)    
Predicted Functional Partners:
EDS05154.1
Metallo-beta-lactamase domain protein; KEGG: azo:azo0296 1.3e-09 probable metallo-beta-lactamase superfamily protein; COG: COG0491 Zn-dependent hydrolases, including glyoxylases; Psort location: Cytoplasmic, score: 8.87.
 
     0.777
mtnB
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: pho:PH0191 1.6e-21 L-fuculose phosphate aldolase K01628; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
       0.706
McbR
Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 1.2e-10 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.656
SrfAA
AMP-binding enzyme; KEGG: ava:Ava_1613 5.8e-204 non-ribosomal peptide synthase K00644; COG: COG1020 Non-ribosomal peptide synthetase modules and related proteins; Psort location: Cytoplasmic, score: 9.96; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.569
EDS05993.1
Alcohol acetyltransferase; COG: NOG32388 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.63.
  
  
 0.566
EDS05150.1
Hypothetical protein.
       0.557
KdgT
Putative 2-keto-3-deoxygluconate transporter; COG: NOG06082 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.553
rpiB_4
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: rru:Rru_A1334 1.1e-31 ribose 5-phosphate isomerase B K01819; COG: COG0698 Ribose 5-phosphate isomerase RpiB; Psort location: Cytoplasmic, score: 8.87.
 
     0.516
tpiA-2
Triose-phosphate isomerase; KEGG: pmu:PM1640 4.8e-77 tpiA_2; triosephosphate isomerase K01803; COG: COG1264 Phosphotransferase system IIB components; Psort location: Cytoplasmic, score: 8.87.
 
     0.490
EDS08022.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.449
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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