STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YccM_24Fe-4S binding domain protein; KEGG: eci:UTI89_C1055 8.7e-11 yccM; putative electron transport protein YccM K00168; COG: COG0348 Polyferredoxin; Psort location: CytoplasmicMembrane, score: 9.99. (314 aa)    
Predicted Functional Partners:
tlpA_1
Redoxin family protein; KEGG: reh:H16_A0306 3.7e-08 bcp; peroxiredoxin K00435; COG: COG0526 Thiol-disulfide isomerase and thioredoxins.
 
   
 0.947
EDS05200.1
Hypothetical protein.
 
     0.931
cusS
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bcz:BCZK1194 1.3e-37 resE; sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.832
EDS05197.1
CAAX amino terminal protease family protein; COG: COG1266 Predicted metal-dependent membrane protease; Psort location: CytoplasmicMembrane, score: 9.99.
 
    0.798
tcrA
KEGG: rha:RHA1_ro05622 2.9e-31 response regulator (protein-glutamate methylesterase) K07669; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.55.
 
     0.778
resA
Redoxin family protein; KEGG: reh:H16_A0306 3.9e-11 bcp; peroxiredoxin K00435; COG: NOG21791 non supervised orthologous group.
 
    0.776
tlpA_2
Redoxin family protein; KEGG: mbo:Mb3945 2.4e-06 trxC; thioredoxin TrxC (TRX) (MPT46) K03671; COG: COG0526 Thiol-disulfide isomerase and thioredoxins.
 
    0.765
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.571
EDS06174.1
4Fe-4S binding domain protein; KEGG: mma:MM1824 0.00011 formylmethanofuran dehydrogenase K00205; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.491
dmsB
4Fe-4S binding domain protein; KEGG: afu:AF1202 8.0e-20 molybdopterin oxidoreductase, iron-sulfur binding subunit K00184; COG: COG0437 Fe-S-cluster-containing hydrogenase components 1; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.439
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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