Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05208.1Hypothetical protein. (39 aa)    
Predicted Functional Partners:
EDS05209.1
Transcriptional regulator, MarR family; KEGG: cvi:CV3636 0.0070 putative acetyltransferase K03828; COG: COG1846 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.559
yheI
ABC transporter, ATP-binding protein; KEGG: cch:Cag_1327 5.4e-37 ATPase K06147; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.559
EDS05211.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0453 1.4e-52 ATPase K06147; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.559
EDS05212.1
Hypothetical protein; COG: COG3339 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.75.
       0.559
EDS05213.1
Hypothetical protein.
       0.559
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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