Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EDS05227.1Hypothetical protein. (450 aa)    
Predicted Functional Partners:
EDS05228.1
Hypothetical protein; COG: COG3225 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
       0.773
EDS05229.1
Hypothetical protein; KEGG: lsl:LSL_1527 0.0054 O-acetyl transferase K00680; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
NatA_3
KEGG: noc:Noc_2142 2.4e-50 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.752
FabG_6
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: hma:pNG7030 7.3e-65 fabG3; 3-oxoacyl-[acyl-carrier protein] reductase K00059; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
       0.752
EDS05232.1
Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
       0.741
RbsB_2
Hypothetical protein; KEGG: msm:MSMEG_6020 0.0014 D-xylose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
       0.547
deoR_2
Transcriptional regulator, DeoR family; COG: COG1349 Transcriptional regulators of sugar metabolism; Psort location: Cytoplasmic, score: 8.87.
       0.511
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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