Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05356.1Hypothetical protein; KEGG: fal:FRAAL5846 0.0055 leuA; 2-isopropylmalate synthase (alpha-isopropylmalate synthase) (alpha-IPM synthetase) K01649; COG: NOG14528 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (110 aa)    
Predicted Functional Partners:
EDS05358.1
Hypothetical protein.
 
     0.886
ssuB
ABC transporter, ATP-binding protein; KEGG: mja:MJ0412 8.8e-53 tauB; putative taurine transport system ATP-binding protein K02049; COG: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.806
EDS05359.1
COG: COG0701 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.797
EDS06187.1
Hypothetical protein.
 
     0.792
tauA
NMT1/THI5-like protein; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.767
cmpB
KEGG: rha:RHA1_ro08170 1.2e-14 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.702
EDS06626.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.682
yedF
Selenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
  
  
 0.682
EDS05360.1
Hypothetical protein.
       0.523
EDS07710.1
Hypothetical protein; KEGG: tfu:Tfu_0134 0.0010 inorganic H+ pyrophosphatase K01507; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.489
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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