Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS04850.1BNR/Asp-box repeat protein; COG: NOG23158 non supervised orthologous group. (488 aa)    
Predicted Functional Partners:
EDS04849.1
DNA-binding helix-turn-helix protein; COG: NOG26022 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.97.
 
     0.804
cssS_2
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spr:spr0529 4.9e-31 vncS; VncS, histidine kinase; COG: COG0642 Signal transduction histidine kinase.
  
     0.635
EDS06180.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.618
EDS04860.1
Acyltransferase; KEGG: mlo:mlr8757 6.2e-07 acetyl transferase, nodulation protein NolL K00680; COG: COG3594 Fucose 4-O-acetylase and related acetyltransferases; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.575
thiQ
KEGG: bur:Bcep18194_A3518 4.1e-23 ABC transporter, ATPase subunit K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
     0.552
EDS05478.1
Hypothetical protein; KEGG: mmp:MMP1296 5.8e-05 pfkC; ADP-dependent phosphofructokinase K00918; COG: COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase; Psort location: Cytoplasmic, score: 8.87.
  
     0.546
EDS08135.1
Hypothetical protein; COG: COG3965 Predicted Co/Zn/Cd cation transporters; Psort location: CytoplasmicMembrane, score: 9.75.
  
     0.525
EDS06178.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.525
EDS05583.1
Antirestriction protein ArdA; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.488
thiD
KEGG: cac:CAC3095 7.9e-84 thiK; phosphomethylpyrimidine kinase K00877:K00941; COG: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Psort location: Cytoplasmic, score: 8.87.
  
    0.447
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.