Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS04859.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (196 aa)    
Predicted Functional Partners:
EDS05358.1
Hypothetical protein.
  
     0.654
EDS05318.1
Hypothetical protein; KEGG: shn:Shewana3_2719 7.4e-05 choline/carnitine/betaine transporter K01718.
 
     0.645
EDS07710.1
Hypothetical protein; KEGG: tfu:Tfu_0134 0.0010 inorganic H+ pyrophosphatase K01507; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.613
EDS06187.1
Hypothetical protein.
  
     0.589
tauA
NMT1/THI5-like protein; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
     0.582
yxlF_5
KEGG: noc:Noc_2142 3.3e-37 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.561
EDS04857.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
       0.561
EDS04858.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.561
EDS08463.1
Hypothetical protein; COG: NOG19648 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.516
EDS04950.1
Hypothetical protein; COG: COG4932 Predicted outer membrane protein.
  
     0.486
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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