STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04884.1Hypothetical protein; KEGG: ava:Ava_3821 0.00013 manganese containing catalase K07217; COG: COG1633 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the Dps family. (176 aa)    
Predicted Functional Partners:
EDS05684.1
Hypothetical protein; KEGG: rpd:RPD_2368 0.0022 5-oxoprolinase (ATP-hydrolyzing) K01469; COG: COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.656
EDS05681.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.642
EDS05682.1
Hypothetical protein; KEGG: cal:orf19.6148 3.1e-05 USO2; intracellular protein transport K01553; COG: COG0845 Membrane-fusion protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.595
EDS06122.1
Hypothetical protein; COG: NOG23666 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.508
EDS05886.1
KEGG: bca:BCE_3047 6.8e-07 glyoxalase family protein K01759; COG: COG0346 Lactoylglutathione lyase and related lyases; Psort location: Cytoplasmic, score: 8.87.
  
     0.473
EDS05267.1
Pyridoxamine 5'-phosphate oxidase family protein; COG: COG3871 Uncharacterized stress protein (general stress protein 26).
  
    0.440
Cmk_3
Hypothetical protein; KEGG: sat:SYN_01231 2.1e-28 cytidylate kinase K00945; COG: NOG14451 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.439
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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