Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS04887.1Hypothetical protein; COG: NOG18028 non supervised orthologous group. (82 aa)    
Predicted Functional Partners:
ydbD_1
Hypothetical protein; KEGG: bpm:BURPS1710b_A1348 3.1e-25 DNA mismatch endonuclease K07217; COG: COG3546 Mn-containing catalase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.961
EDS08755.1
Hypothetical protein; KEGG: mfa:Mfla_1436 7.6e-05 catalase K00429; COG: COG3546 Mn-containing catalase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.852
ydbD_2
Hypothetical protein; KEGG: bpm:BURPS1710b_A1348 8.0e-20 DNA mismatch endonuclease K07217; COG: COG3546 Mn-containing catalase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.832
EDS04888.1
Hypothetical protein.
  
    0.807
spoIIID
Sporulation transcriptional regulator SpoIIID; COG: NOG13855 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.593
EDS06647.1
Putative stage V sporulation protein AC; COG: NOG09745 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.588
spoVAD
Stage V sporulation protein AD; COG: NOG06312 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.75.
  
     0.561
spoIVA
Stage IV sporulation protein A; COG: NOG05962 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.549
EDS06649.1
Hypothetical protein; COG: NOG11305 non supervised orthologous group.
  
     0.544
srrA_3
Response regulator receiver domain protein; KEGG: ava:Ava_1878 6.3e-43 two component transcriptional regulator, winged helix family K07659; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.534
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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