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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04888.1Hypothetical protein. (74 aa)    
Predicted Functional Partners:
EDS04887.1
Hypothetical protein; COG: NOG18028 non supervised orthologous group.
  
    0.808
ydbD_1
Hypothetical protein; KEGG: bpm:BURPS1710b_A1348 3.1e-25 DNA mismatch endonuclease K07217; COG: COG3546 Mn-containing catalase; Psort location: Cytoplasmic, score: 8.87.
  
    0.787
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.629
EDS08609.1
Glycosyltransferase, group 2 family protein; KEGG: stm:STM2085 7.7e-54 rfbN; LPS side chain defect: rhamnosyl transferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.605
resE_6
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bcz:BCZK1343 2.0e-62 sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase.
  
  
 0.557
srrA_3
Response regulator receiver domain protein; KEGG: ava:Ava_1878 6.3e-43 two component transcriptional regulator, winged helix family K07659; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.534
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.528
HtpG_2
Ser/Thr phosphatase family protein; KEGG: hpa:HPAG1_0211 1.2e-08 chaperone and heat shock protein 90; COG: COG0326 Molecular chaperone, HSP90 family; Psort location: Cytoplasmic, score: 9.65.
   
 0.516
htpG_1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: hpa:HPAG1_0211 2.6e-60 chaperone and heat shock protein 90; COG: COG0326 Molecular chaperone, HSP90 family; Psort location: Cytoplasmic, score: 9.98.
   
 0.516
EDS07977.1
Hypothetical protein; KEGG: rno:309804 1.6e-08 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: KOG3544 Collagens (type IV and type XIII), and related proteins; Psort location: Cytoplasmic, score: 8.87.
   
 0.468
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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