STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadA-2Cadmium-exporting ATPase; KEGG: tte:TTE2467 5.1e-144 zntA2; cation transport ATPases; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00. (620 aa)    
Predicted Functional Partners:
ziaR
KEGG: rru:Rru_A1450 5.9e-09 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.957
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.773
EDS04898.1
KEGG: cyb:CYB_1515 0.00089 tetratricopeptide repeat/protein kinase domain protein K08884; COG: COG0457 FOG: TPR repeat.
       0.768
copA
Copper-exporting ATPase; KEGG: efa:EF0298 2.0e-194 copper-translocating P-type ATPase K01533; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
0.741
copZ
Heavy metal-associated domain protein; KEGG: bpm:BURPS1710b_A1755 1.7e-07 cueA; copper-translocating P-type ATPase K01533; COG: COG2608 Copper chaperone.
  
 
 0.734
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.566
cadA
Cadmium-exporting ATPase; KEGG: btl:BALH_0536 3.1e-153 cation-transporting ATPase, P-type; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
 
    
0.485
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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