Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS04905.1Transcriptional regulator, PadR family; KEGG: pma:Pro1114 0.0038 rsuA; 16S rRNA pseudouridylate synthase K06178; COG: COG1695 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (107 aa)    
Predicted Functional Partners:
EDS04906.1
COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.957
EDS04907.1
Hypothetical protein; COG: COG3595 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.881
YqjI
Transcriptional regulator, PadR family; KEGG: pho:PH1406 0.00019 threonine synthase K01733; COG: COG1695 Predicted transcriptional regulators.
  
     0.770
EDS05677.1
Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.770
EDS04908.1
PspC domain protein; COG: COG1983 Putative stress-responsive transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.647
EDS05676.1
Hypothetical protein; COG: NOG17748 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.63.
 
     0.451
EDS04909.1
Hypothetical protein; COG: NOG17864 non supervised orthologous group.
       0.409
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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