STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04907.1Hypothetical protein; COG: COG3595 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (282 aa)    
Predicted Functional Partners:
EDS04906.1
COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.937
EDS04905.1
Transcriptional regulator, PadR family; KEGG: pma:Pro1114 0.0038 rsuA; 16S rRNA pseudouridylate synthase K06178; COG: COG1695 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
    0.882
EDS07956.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.738
EDS08474.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.728
EDS07497.1
Hypothetical protein.
  
     0.693
EDS08473.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.691
EDS04898.1
KEGG: cyb:CYB_1515 0.00089 tetratricopeptide repeat/protein kinase domain protein K08884; COG: COG0457 FOG: TPR repeat.
  
     0.688
EDS06316.1
Hypothetical protein; KEGG: bba:Bd1032 0.0026 mepA; hypothetical protein K07261; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.682
EDS08607.1
Cohesin domain protein; KEGG: bce:BC5339 8.8e-07 DNA-directed RNA polymerase delta chain K03048; COG: COG5129 Nuclear protein with HMG-like acidic region.
 
     0.652
EDS08153.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80.
  
    0.646
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.