STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04908.1PspC domain protein; COG: COG1983 Putative stress-responsive transcriptional regulator; Psort location: Cytoplasmic, score: 8.87. (64 aa)    
Predicted Functional Partners:
DesK
Histidine kinase; KEGG: bld:BLi04303 1.2e-17 yvfT; similar to two-component sensor histidine kinase [YvfU]; RBL03602 K02480; COG: COG4585 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.708
cckA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ret:RHE_CH02326 3.0e-25 probable two-component sensor histidine kinase/response regulator hybrid protein; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.682
EDS04905.1
Transcriptional regulator, PadR family; KEGG: pma:Pro1114 0.0038 rsuA; 16S rRNA pseudouridylate synthase K06178; COG: COG1695 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.665
EDS04906.1
COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.650
EDS04907.1
Hypothetical protein; COG: COG3595 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.637
HtrB_2
PDZ/DHR/GLGF domain protein; KEGG: chy:CHY_0655 1.0e-60 htrA; serine protease Do; COG: COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
 0.549
HtrB_1
PDZ/DHR/GLGF domain protein; KEGG: chy:CHY_0655 2.3e-29 htrA; serine protease Do; COG: COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
 0.549
EDS04909.1
Hypothetical protein; COG: NOG17864 non supervised orthologous group.
       0.516
EDS07433.1
Hypothetical protein; COG: NOG18742 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.434
EDS04910.1
Glycosyltransferase, WecB/TagA/CpsF family; KEGG: tte:TTE2163 5.2e-13 wecG; teichoic acid biosynthesis proteins; COG: COG1922 Teichoic acid biosynthesis proteins; Psort location: Cytoplasmic, score: 8.87.
       0.417
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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