STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04909.1Hypothetical protein; COG: NOG17864 non supervised orthologous group. (64 aa)    
Predicted Functional Partners:
EDS05074.1
COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.679
EDS04910.1
Glycosyltransferase, WecB/TagA/CpsF family; KEGG: tte:TTE2163 5.2e-13 wecG; teichoic acid biosynthesis proteins; COG: COG1922 Teichoic acid biosynthesis proteins; Psort location: Cytoplasmic, score: 8.87.
       0.627
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.536
SspC2
Small, acid-soluble spore protein, alpha/beta type; COG: NOG16862 non supervised orthologous group.
  
   
 0.524
EDS05134.1
Hypothetical protein; KEGG: cpf:CPF_2368 3.3e-69 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases; Psort location: Cytoplasmic, score: 8.87.
  
     0.520
EDS04908.1
PspC domain protein; COG: COG1983 Putative stress-responsive transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.516
vpr
Putative protease CspB; KEGG: cpf:CPF_2368 5.8e-65 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases; Psort location: Extracellular, score: 9.55.
  
     0.506
EDS05758.1
LysM domain protein; KEGG: oih:OB0220 0.0012 N-acetylmuramoyl-L-alanine amidase (autolysine) K01448; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
  
     0.481
EDS08104.1
Stage III sporulation protein AA; COG: COG3854 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.480
cotS
Spore coat protein, CotS family; COG: NOG09979 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.468
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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