STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsXEfflux ABC transporter, permease protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (302 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 0.997
mepM_2
Peptidase, M23 family; KEGG: ava:Ava_0183 2.0e-48 peptidase M23B K08259; COG: COG0739 Membrane proteins related to metalloendopeptidases; Psort location: Extracellular, score: 9.95.
 
 
 
 0.975
sleB_1
Cell Wall Hydrolase; KEGG: oih:OB0662 2.2e-09 sporulation specific N-acetylmuramoyl-L-alanine amidase K01449; COG: COG0739 Membrane proteins related to metalloendopeptidases; Psort location: Extracellular, score: 9.73.
 
 
 
 0.874
cdaR
Hypothetical protein; KEGG: shn:Shewana3_2682 0.00084 transcriptional regulator, CdaR K01694; COG: COG3835 Sugar diacid utilization regulator; Psort location: Cytoplasmic, score: 8.87.
       0.811
ctpB
Peptidase, S41 family; KEGG: cac:CAC0499 2.0e-71 carboxyl-terminal protease K03797; COG: COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
       0.772
ripA
NlpC/P60 family protein; KEGG: bce:BC5234 1.5e-12 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.95.
 
  
 0.757
LytF
NlpC/P60 family protein; KEGG: psp:PSPPH_0470 1.7e-17 NLP/P60 family protein K01183; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.95.
 
  
 0.749
MepS
NlpC/P60 family protein; KEGG: psp:PSPPH_0470 5.8e-10 NLP/P60 family protein K01183; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.73.
 
  
 0.647
EDS04912.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.541
pyrF
KEGG: blo:BL0791 7.1e-67 pyrF; orotidine 5'-phosphate decarboxylase K01591; COG: COG0284 Orotidine-5-phosphate decarboxylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the OMP decarboxylase family. Type 2 subfamily.
     
 0.497
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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