STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04926.1Hypothetical protein; KEGG: hwa:HQ1074A 4.2e-07 pepB; aminopeptidase (similar to leucyl aminopeptidase, aminopeptidase T) K01255; COG: COG2309 Leucyl aminopeptidase (aminopeptidase T); Psort location: Cytoplasmic, score: 8.87. (682 aa)    
Predicted Functional Partners:
EDS04924.1
VanZ-like protein; COG: COG4767 Glycopeptide antibiotics resistance protein; Psort location: CytoplasmicMembrane, score: 9.26.
 
     0.864
EDS04925.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.793
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
     0.775
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.768
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.742
EDS07942.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.740
EDS04923.1
Hypothetical protein.
 
     0.740
EDS06302.1
Hypothetical protein.
  
     0.733
EDS08196.1
Hypothetical protein.
  
     0.731
EDS06639.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.729
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.