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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YtrA_1KEGG: btk:BT9727_3817 6.4e-11 transcriptional regulator, GntR family K07979; COG: COG1725 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (139 aa)    
Predicted Functional Partners:
clpC
ATPase family associated with various cellular activities (AAA); KEGG: sab:SAB0475 4.3e-227 clpC; endopeptidase K03696; COG: COG0542 ATPases with chaperone activity, ATP-binding subunit; Psort location: Cytoplasmic, score: 9.98; Belongs to the ClpA/ClpB family.
       0.842
EDS04936.1
Hypothetical protein.
       0.700
EDS08746.1
Hypothetical protein; COG: NOG21911 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.608
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.558
ald
Alanine dehydrogenase; KEGG: lmf:LMOf2365_1601 1.9e-112 ald; alanine dehydrogenase K00259; COG: COG0686 Alanine dehydrogenase; Psort location: Cytoplasmic, score: 9.98; Belongs to the AlaDH/PNT family.
       0.535
ytrA_2
KEGG: bcz:BCZK3833 1.8e-13 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.416
EDS05143.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.414
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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