STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS04936.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
EDS05745.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.75.
  
     0.772
EDS07942.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.770
EDS05143.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.768
EDS06654.1
KEGG: cyb:CYB_1515 0.0081 tetratricopeptide repeat/protein kinase domain protein K08884; COG: COG0457 FOG: TPR repeat.
  
     0.764
mecB
COG: COG4862 Negative regulator of genetic competence, sporulation and motility; Psort location: Cytoplasmic, score: 8.87.
  
     0.744
EDS06920.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.743
EDS08196.1
Hypothetical protein.
  
     0.742
EDS07568.1
Hypothetical protein; KEGG: osa:3131434 0.0030 rpoC2; RNA polymerase beta'' chain K03046; COG: NOG12748 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.80.
  
     0.740
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.737
EDS06439.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.737
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.