STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77640.1Redox-active disulfide protein 2. (98 aa)    
Predicted Functional Partners:
EFB74560.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: afu:AF1262 1.2e-96 noxB-2; NADH oxidase (NoxB-2) K00359.
  
 0.997
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.955
EFB77641.1
Putative permease; KEGG: rfr:Rfer_1505 0.0057 proton-translocating NADH-quinone oxidoreductase, chain M K00342; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.954
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.937
EFB74502.1
Hypothetical protein.
   
 0.930
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
   
   0.927
EFB74474.1
DnaJ domain protein; Psort location: Cytoplasmic, score: 8.96.
   
 0.862
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
    
 0.856
EFB75780.1
DnaJ domain protein; KEGG: cme:CMJ043C 0.0099 phycocyanobilin lyase alpha subunit K02288; Psort location: Cytoplasmic, score: 9.26.
    
 0.856
EFB77639.1
Low molecular weight phosphotyrosine protein phosphatase; KEGG: lsl:LSL_0888 2.1e-42 arsC; arsenate reductase; Psort location: Cytoplasmic, score: 8.96; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.820
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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