STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxBKEGG: cac:CAC0089 7.2e-74 serA; D-3-phosphoglycerate dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (316 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase; KEGG: tte:TTE1815 6.5e-160 pykF; pyruvate kinase K00873; Belongs to the pyruvate kinase family.
 
 0.948
pdxB-2
KEGG: hma:rrnAC0362 2.4e-36 serA4; phosphoglycerate dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.97.
 
  
 
0.847
ilvA
KEGG: chy:CHY_2459 4.7e-102 ilvA2; threonine dehydratase K01754; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.835
pdxB-3
4-phosphoerythronate dehydrogenase; KEGG: tbd:Tbd_0950 6.0e-102 D-isomer specific 2-hydroxyacid dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.26.
 
  
 
0.835
nifJ
Pyruvate synthase; KEGG: ctc:CTC01741 3.5e-296 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.834
EFB74583.1
Hypothetical protein; KEGG: ctc:CTC01741 1.0e-113 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.834
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
  0.831
EFB77522.1
MOFRL family protein; KEGG: dvu:DVU0765 1.4e-70 hydroxypyruvate reductase, putative K00050.
 
 
 0.824
EFB77393.1
MOFRL family protein; KEGG: rxy:Rxyl_2854 6.9e-69 hydroxypyruvate reductase K00050; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.824
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
 
   
 0.820
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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