STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77360.1TRAP transporter, DctM subunit; KEGG: mja:MJ0222 5.9e-07 probalbe ATP synthase subunit I K02123; Psort location: CytoplasmicMembrane, score: 10.00. (433 aa)    
Predicted Functional Partners:
EFB77361.1
TRAP transporter, DctQ-like membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.993
EFB75252.1
TRAP transporter, DctQ-like membrane protein; Psort location: CytoplasmicMembrane, score: 9.46.
 
 0.971
EFB77362.1
TRAP transporter solute receptor, DctP family.
 
  
 0.950
EFB75251.1
TRAP transporter solute receptor, DctP family.
  
 0.832
nifJ
Pyruvate synthase; KEGG: ctc:CTC01741 3.5e-296 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.813
EFB74583.1
Hypothetical protein; KEGG: ctc:CTC01741 1.0e-113 pyruvate-flavodoxin oxidoreductase K03737.
    
  0.813
EFB77363.1
KEGG: msu:MS0539 3.9e-130 alpha-glucosidases, family 31 of glycosyl hydrolases K01187; Psort location: Cytoplasmic, score: 8.96.
 
     0.801
EFB75435.1
AMP-binding enzyme; KEGG: cje:Cj1307 1.3e-97 putative amino acid activating enzyme K01932; Psort location: Cytoplasmic, score: 9.26.
    
 0.507
EFB77364.1
Hypothetical protein.
       0.504
EFB75254.1
GroES-like protein; KEGG: bsu:BG13207 1.0e-74 yjmD; similar to alcohol dehydrogenase K00100; Psort location: Cytoplasmic, score: 9.97.
    
 0.499
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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