STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77387.1LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 5.0e-09 transcriptional regulator, LytR/AlgR family K07705; Psort location: Cytoplasmic, score: 8.96. (234 aa)    
Predicted Functional Partners:
EFB77388.1
KEGG: tte:TTE0562 0.00072 baeS2; sensory transduction histidine kinases K07706; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.948
EFB74826.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bli:BL01744 1.6e-55 histidine kinase,histidine kinase, HAMP region; Psort location: Cytoplasmic, score: 8.96.
 
 0.928
EFB74966.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bld:BLi01366 3.0e-33 yesM; similar to two-component sensor histidine kinase [YesN]; RBL02409 K07718; Psort location: Cytoplasmic, score: 8.96.
 
 
  0.818
EFB75353.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bha:BH3447 3.4e-41 two-component sensor histidine kinase K07718.
 
 
  0.816
EFB74450.1
Hypothetical protein; KEGG: ssp:SSP0840 9.3e-05 accessory gene regulator C K07706; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
  0.816
EFB74947.1
HAMP domain protein; KEGG: bli:BL01744 1.9e-37 histidine kinase,histidine kinase, HAMP region.
 
 
  0.813
EFB77425.1
PAS domain S-box protein; KEGG: gka:GK0559 7.3e-65 two-component sensor histidine kinase K02476; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.807
EFB74926.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bli:BL01744 2.6e-36 histidine kinase,histidine kinase, HAMP region.
 
 
  0.804
EFB76431.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bli:BL01744 2.0e-62 histidine kinase,histidine kinase, HAMP region; Psort location: Cytoplasmic, score: 8.96.
 
 
  0.802
EFB74978.1
Hypothetical protein; KEGG: tte:TTE0562 3.0e-08 baeS2; sensory transduction histidine kinases K07706; Psort location: CytoplasmicMembrane, score: 9.46.
 
  
 0.793
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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