STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77400.1LPXTG-motif cell wall anchor domain protein; KEGG: chu:CHU_1155 0.00019 CHU large protein; candidate xyloglucanase, glycoside hydrolase family 74 protein K01238. (858 aa)    
Predicted Functional Partners:
EFB76472.1
DNA-binding helix-turn-helix protein.
  
     0.634
EFB77399.1
Hypothetical protein; KEGG: cal:orf19.4072 1.1e-06 HYR10; similar to cell surface flocculin K01186; Psort location: Extracellular, score: 9.64.
  
     0.516
EFB74382.1
Repeat protein; KEGG: chu:CHU_0938 2.6e-25 CHU large protein; uncharacterized K01238.
  
     0.507
EFB76051.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.457
EFB77401.1
Putative calcium-translocating P-type ATPase, PMCA-type; KEGG: lac:LBA1389 1.1e-262 cation-transporting ATPase K01529; Psort location: CytoplasmicMembrane, score: 10.00.
       0.442
EFB77398.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.420
EFB75814.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.419
EFB75263.1
LPXTG-motif cell wall anchor domain protein; KEGG: ddi:DDB0215351 6.8e-09 celA; cellulase 270-6 K01179.
  
     0.403
EFB76890.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.402
EFB76468.1
Plasmid recombination enzyme; Psort location: Cytoplasmic, score: 8.96.
  
     0.401
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.