STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77417.1Hypothetical protein. (56 aa)    
Predicted Functional Partners:
EFB77418.1
Hypothetical protein.
       0.773
EFB77416.1
Nucleic acid-binding domain protein.
       0.538
EFB77419.1
Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.96.
       0.481
EFB77420.1
FAD dependent oxidoreductase; KEGG: dre:325922 3.7e-26 retsat; retinol saturase (all-trans-retinol 13,14-reductase); Psort location: Cytoplasmic, score: 8.96.
       0.481
EFB77421.1
Oxidoreductase NAD-binding domain protein; KEGG: rde:RD1_0005 6.5e-25 vanB; vanillate O-demethylase oxidoreductase, putative K00492; Psort location: Cytoplasmic, score: 8.96.
       0.481
EFB77414.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.406
EFB77415.1
ABC transporter, solute-binding protein.
       0.406
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.