STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77421.1Oxidoreductase NAD-binding domain protein; KEGG: rde:RD1_0005 6.5e-25 vanB; vanillate O-demethylase oxidoreductase, putative K00492; Psort location: Cytoplasmic, score: 8.96. (387 aa)    
Predicted Functional Partners:
EFB75893.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: cte:CT0282 1.6e-85 glutamate synthase (NADPH) small chain K00266; Psort location: Cytoplasmic, score: 9.97.
 
 0.997
EFB74421.1
Nitrite/sulfite reductase ferredoxin domain protein; KEGG: cpe:CPE0547 1.2e-94 ferredoxin-nitrite reductase K00366; Psort location: Cytoplasmic, score: 8.96.
  
 0.993
EFB77575.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: cno:NT01CX_0026 5.2e-135 2,4-dienoyl-CoA reductase, putative; Psort location: Cytoplasmic, score: 8.96.
 
 0.989
EFB77527.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: pca:Pcar_2295 2.7e-113 probable glutamate synthase small chain K00266; Psort location: Cytoplasmic, score: 9.97.
   
 0.981
EFB76825.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: gka:GK1432 2.4e-137 glutamate synthasesmall subunit K00266; Psort location: Cytoplasmic, score: 9.97.
   
 0.981
gltA
KEGG: ctc:CTC02420 1.0e-161 glutamate synthase (NADPH) small chain K00266; Psort location: Cytoplasmic, score: 9.97.
   
 0.981
nifU
Fe-S iron-sulfur cluster assembly protein, NifU family; KEGG: rxy:Rxyl_1354 8.3e-18 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 8.96.
  
 0.979
EFB76966.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
 0.979
EFB75400.1
4Fe-4S binding domain protein; KEGG: tte:TTE0128 8.0e-20 nuoI; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) K00338.
  
 
 0.974
EFB75925.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: nfa:nfa23600 2.8e-24 putative short chain dehydrogenase K00059; Psort location: Cytoplasmic, score: 9.97.
 
 0.972
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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