STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77445.1Carbohydrate ABC transporter, carbohydrate-binding protein. (451 aa)    
Predicted Functional Partners:
EFB77443.1
KEGG: ava:Ava_0243 2.4e-05 molybdate ABC transporter, permease protein K02018; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.996
EFB77444.1
ABC transporter, permease protein; KEGG: baa:BA_0884 0.00058 binding-protein-dependent transport systems inner membrane component K00294; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.972
gnpA
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase.
 
     0.871
EFB77447.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 7.4e-17 adaA; methylphosphotriester-DNA alkyltransferase (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.97.
 
     0.853
EFB77382.1
KEGG: sth:STH1782 1.7e-97 sugar ABC transportor ATP-binding protein K05816; Belongs to the ABC transporter superfamily.
  
 0.794
EFB77412.1
KEGG: sil:SPO0237 3.3e-69 upgC; SN-glycerol-3-phosphate ABC transporter, ATP-binding protein K05816; Psort location: Cytoplasmic, score: 9.12.
  
 0.794
EFB75594.1
KEGG: sth:STH1782 3.3e-117 sugar ABC transportor ATP-binding protein K05816; Psort location: Cytoplasmic, score: 9.12; Belongs to the ABC transporter superfamily.
  
 0.794
EFB75349.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.740
EFB77440.1
Hypothetical protein.
 
     0.735
EFB75350.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.699
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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