STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77454.1Hypothetical protein. (492 aa)    
Predicted Functional Partners:
EFB77453.1
Hypothetical protein.
      
0.714
EFB77455.1
Hypothetical protein.
      
0.689
EFB77449.1
Response regulator receiver domain protein; KEGG: ava:Ava_1878 2.7e-35 two component transcriptional regulator, winged helix family K07659; Psort location: Cytoplasmic, score: 9.97.
       0.660
EFB77451.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: gsu:GSU1101 2.0e-37 sensory box histidine kinase K07636; Psort location: CytoplasmicMembrane, score: 7.88.
       0.660
EFB77452.1
Hypothetical protein.
       0.660
EFB77450.1
Hypothetical protein.
       0.494
EFB77448.1
Glycosyl hydrolase family 3 N-terminal domain protein; KEGG: rha:RHA1_ro02947 3.5e-152 beta-glucosidase K05349; Belongs to the glycosyl hydrolase 3 family.
       0.419
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.